|
patient
|
CHC3798T |
|
Age
|
51 |
|
Gender
|
F |
|
Origin
|
French |
|
CCNA2/E1alteration
|
CCNA2 |
|
CCNA2/E1alteration type
|
HBV |
|
Hepatitis B
|
yes |
|
Hepatitis C
|
no |
|
Metabolic syndrome
|
no |
|
Fibrosis stage
|
F2-F3 |
|
Edmondson grade
|
III-IV |
|
Size of the nodule (mm) / Tumor size (mm)
|
120 |
|
Vascular invasion
|
yes |
|
Alcohol(0:no alcohol intake;1:social drinker;2:~60g/day;3:>60g/day)
|
no |
|
WES data EGA series
|
EGAS00001003063 |
|
WES data sequencer
|
HiSeq 4000 |
|
WES data capture kit
|
SureSelect Clinical Research Exome V2 - 64 Mb |
|
RNA-seq data EGA series
|
EGAS00001002879 |
|
RNA-seq data library
|
Illumina TruSeq Stranded mRNA kit |
|
RNA-seq read length
|
2x75 |
|
RNA-seq TopHat2 alignement options
|
-r 150 -g 2 --library-type fr-firststrand |
|
WGS data EGA series
|
EGAS00001002888 |
Virus Dataset Sample Detail