Virus Dataset Sample Detail

> Detail clinical information for each sample


Clinical Information
patient CHC1185T
Age 53
Gender M
Origin French
CCNA2/E1alteration None
Hepatitis B yes
Hepatitis C no
Metabolic syndrome no
Fibrosis stage F4
Edmondson grade III-IV
Size of the nodule (mm) / Tumor size (mm) 30
Vascular invasion no
Alcohol(0:no alcohol intake;1:social drinker;2:~60g/day;3:>60g/day) yes
Last survival status alive without relapse
Last survival delay (months) 92
WES data EGA series EGAS00001001002
WES data sequencer HiSeq 2000
WES data capture kit SureSelect Human All-Exon kit v5+UTRs-75Mb
RNA-seq data EGA series EGAS00001002879
RNA-seq data library Illumina TruSeq Stranded mRNA kit
RNA-seq read length 2x75
RNA-seq TopHat2 alignement options -r 250 -g 2 --library-type fr-firststrand