HBV Target gene Detail Information

> ZNF680 Gene Search Result


Gene Information
Gene Name ZNF680
Gene ID 340252
Gene Full Name zinc finger protein 680
Transcripts ENSG00000173041
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins, Transcription factors
Uniport_ID Q8NEM1
HGNC ID HGNC:26897
VEGA ID OTTHUMG00000156542
String ID 9606.ENSP00000309330
PharmGKB ID PA142670481
Target gene [ZNF680] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007724 chr7 19 6 25 View
1012528 chr7 5 1 6 View
1013722 chr7 3 1 4 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of ZNF680 expression and immune infiltrating cell level correlation result in HBV+ samples
ZNF680 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).