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HPV Target gene Detail Information

> ZIC3 Gene Search Result


Gene Information
Gene Name ZIC3
Gene ID 7547
Gene Full Name Zic family member 3
Gene Alias HTX; HTX1; ZNF203; VACTERLX
Transcripts ENSG00000156925
Virus HPV
Gene Type protein coding
HPA Location Info Nucleoplasm;
HPA Protein Class Info Disease related genes, Predicted intracellular proteins, Transcription factors
Uniport_ID O60481
HGNC ID HGNC:12874
VEGA ID OTTHUMG00000022525
OMIM ID 300265
String ID 9606.ENSP00000287538
PharmGKB ID PA37463
Target gene [ZIC3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5201052 chrX 1 1 View
5201338 chrX 2 1 3 View
5403484 chrX 4 4 View
5404276 chrX 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of ZIC3 expression and immune infiltrating cell level correlation result in HPV+ samples
ZIC3 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).