HBV Target gene Detail Information

> WDR62 Gene Search Result

Gene Information

Gene Name	WDR62
Gene ID	284403
Gene Full Name	WD repeat domain 62
Gene Alias	MCPH2; C19orf14
Transcripts	ENSG00000075702
Virus	HBV
Gene Type	protein coding
HPA Location Info	Cytosol;Centriolar satellite;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Uniport_ID	O43379
HGNC ID	HGNC:24502
VEGA ID	OTTHUMG00000048139
OMIM ID	613583
String ID	9606.ENSP00000384792
PharmGKB ID	PA134963627

Target gene [WDR62] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1009695	chr19	15			15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE114783 (GEO)	Chronic HBV (CHB) infection	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Hepatocellular carcinoma	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO)	Liver cirrhosis	36	Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783
HeatMap of cell type fractions in all samples	Lollipop of WDR62 expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
WDR62 expression: Low -> High
Lollipop of WDR62 expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples	Lollipop of WDR62 expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples


> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of WDR62 expression and immune infiltrating cell level correlation result in HBV+ samples
WDR62 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).