HBV Target gene Detail Information

> VTI1A Gene Search Result


Gene Information
Gene Name VTI1A
Gene ID 143187
Gene Full Name vesicle transport through interaction with t-SNAREs 1A
Gene Alias MMDS3; MVti1; VTI1RP2; Vti1-rp2
Transcripts ENSG00000151532
Virus HBV
Gene Type protein coding
HPA Location Info Golgi apparatus;Vesicles;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96AJ9
HGNC ID HGNC:17792
VEGA ID OTTHUMG00000019063
OMIM ID 614316
String ID 9606.ENSP00000376792
PharmGKB ID PA134928049
Target gene [VTI1A] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1002949 chr10 144 39 2 185 View
1002971 chr10 142 38 2 182 View
1008588 chr10 20 20 View
1015384 chr10 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE114783 (GEO) Chronic HBV (CHB) infection 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Hepatocellular carcinoma 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
GSE114783 (GEO) Liver cirrhosis 36 Chronic hepatitis B patients (HBV+)(10),Hepatocellular carcinoma (HBV+)(10),Liver cirrhosis(HBV+)(10),Normal(3),HBV carriers (3)
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: GSE114783

HeatMap of cell type fractions in all samples Lollipop of VTI1A expression and immune infiltrating cell level correlation result in HBV+ Chronic HBV (CHB) infection samples
VTI1A expression: Low -> High
Lollipop of VTI1A expression and immune infiltrating cell level correlation result in HBV+ Liver cirrhosis samples Lollipop of VTI1A expression and immune infiltrating cell level correlation result in HBV+ Hepatocellular carcinoma samples

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of VTI1A expression and immune infiltrating cell level correlation result in HBV+ samples
VTI1A expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).