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HIV Target gene Detail Information

> VMP1 Gene Search Result


Gene Information
Gene Name VMP1
Gene ID 81671
Gene Full Name vacuole membrane protein 1
Gene Alias EPG3; TANGO5; TMEM49
Transcripts ENSG00000062716
Virus HIV
Gene Type protein coding
HPA Location Info Endoplasmic reticulum;Nucleoli;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q96GC9
HGNC ID HGNC:29559
VEGA ID OTTHUMG00000179882
OMIM ID 611753
String ID 9606.ENSP00000262291
PharmGKB ID PA142670765
Target gene [VMP1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000056 chr17 967 313 255 1535 View
4000061 chr17 889 292 269 1450 View
4000835 chr17 70 92 107 269 View
4001215 chr17 59 93 40 192 View
4002534 chr17 37 51 2 90 View
4002558 chr17 23 13 53 89 View
4002567 chr17 89 89 View
4002881 chr17 49 10 17 76 View
4002885 chr17 74 2 76 View
4003415 chr17 2 32 28 62 View
4003752 chr17 10 45 55 View
4004391 chr17 8 37 45 View
4004627 chr17 26 13 2 41 View
4004800 chr17 26 4 9 39 View
4004972 chr17 35 2 37 View
4005065 chr17 34 2 36 View
4006531 chr17 12 12 24 View
4008487 chr17 8 7 15 View
4009454 chr17 8 3 11 View
4010042 chr17 8 2 10 View
4010845 chr17 1 7 8 View
4011458 chr17 6 1 7 View
4011459 chr17 6 1 7 View
4011893 chr17 4 2 6 View
4012014 chr17 5 5 View
4012918 chr17 3 1 4 View
4013524 chr17 2 1 3 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of VMP1 expression and immune infiltrating cell level correlation result in HIV+ samples
VMP1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).