HIV Target gene Detail Information

> USP47 Gene Search Result

Gene Information

Gene Name	USP47
Gene ID	55031
Gene Full Name	ubiquitin specific peptidase 47
Gene Alias	TRFP
Transcripts	ENSG00000170242
Virus	HIV
Gene Type	protein coding
HPA Location Info	Intermediate filaments;Vesicles;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q96K76
HGNC ID	HGNC:20076
VEGA ID	OTTHUMG00000165685
OMIM ID	614460
String ID	9606.ENSP00000433146
PharmGKB ID	PA134880952

Target gene [USP47] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002022	chr11	62	41	14	117	View
4004694	chr11	38	1	1	40	View
4006522	chr11	23	1		24	View
4007099	chr11	9	10	2	21	View
4012048	chr11	3	2		5	View
4013780	chr11		3		3	View
4015871	chr11				0	View
4016481	chr11				0	View
4100044	chr11				0	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of USP47 expression and immune infiltrating cell level correlation result in HIV+ samples
USP47 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of USP47 expression and immune infiltrating cell level correlation result in HIV+ samples
USP47 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).