HIV Target gene Detail Information

> USP30 Gene Search Result

Gene Information

Gene Name	USP30
Gene ID	84749
Gene Full Name	ubiquitin specific peptidase 30
Transcripts	ENSG00000135093
Virus	HIV
Gene Type	protein coding
HPA Location Info
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Enzymes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q70CQ3
HGNC ID	HGNC:20065
VEGA ID	OTTHUMG00000133613
OMIM ID	612492
String ID	9606.ENSP00000257548
PharmGKB ID	PA134971149

Target gene [USP30] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4007838	chr12	13	4		17	View
4008222	chr12	16			16	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of USP30 expression and immune infiltrating cell level correlation result in HIV+ samples
USP30 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).