HIV Target gene Detail Information

> USP24 Gene Search Result

Gene Information

Gene Name	USP24
Gene ID	23358
Gene Full Name	ubiquitin specific peptidase 24
Transcripts	ENSG00000162402
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Cytosol;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q9UPU5
HGNC ID	HGNC:12623
VEGA ID	OTTHUMG00000008135
OMIM ID	610569
String ID	9606.ENSP00000294383
PharmGKB ID	PA37248

Target gene [USP24] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006065	chr1	20	3	4	27	View
4007016	chr1	11	6	4	21	View
4007174	chr1	10	8	2	20	View
4010651	chr1	6	2		8	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of USP24 expression and immune infiltrating cell level correlation result in HIV+ samples
USP24 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of USP24 expression and immune infiltrating cell level correlation result in HIV+ samples
USP24 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).