HIV Target gene Detail Information

> TTC9C Gene Search Result

Gene Information

Gene Name	TTC9C
Gene ID	283237
Gene Full Name	tetratricopeptide repeat domain 9C
Transcripts	ENSG00000162222
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8N5M4
HGNC ID	HGNC:28432
VEGA ID	OTTHUMG00000167607
String ID	9606.ENSP00000325266
PharmGKB ID	PA142670685

Target gene [TTC9C] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002356	chr11	93	5		98	View
4300033	chr11	19	3	2	24	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TTC9C expression and immune infiltrating cell level correlation result in HIV+ samples
TTC9C expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of TTC9C expression and immune infiltrating cell level correlation result in HIV+ samples
TTC9C expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).