HIV Target gene Detail Information

> TTC28 Gene Search Result

Gene Information

Gene Name	TTC28
Gene ID	23331
Gene Full Name	tetratricopeptide repeat domain 28
Gene Alias	TPRBK
Transcripts	ENSG00000100154
Virus	HIV
Gene Type	protein coding
HPA Location Info	Mitochondria;Nucleoli;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q96AY4
HGNC ID	HGNC:29179
VEGA ID	OTTHUMG00000151006
OMIM ID	615098
String ID	9606.ENSP00000381003
PharmGKB ID	PA145147752

Target gene [TTC28] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000106	chr22	90	713	266	1069	View
4001336	chr22	64	56	57	177	View
4013808	chr22	1		2	3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TTC28 expression and immune infiltrating cell level correlation result in HIV+ samples
TTC28 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).