HTLV1 Target gene Detail Information

> TSN Gene Search Result

Gene Information

Gene Name	TSN
Gene ID	7247
Gene Full Name	translin
Gene Alias	C3PO; RCHF1; TBRBP; TRSLN; BCLF-1; REHF-1
Transcripts	ENSG00000211460
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Endoplasmic reticulum;Nucleoplasm;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q15631
HGNC ID	HGNC:12379
VEGA ID	OTTHUMG00000153334
OMIM ID	600575
String ID	9606.ENSP00000374332
PharmGKB ID	PA37047

Target gene [TSN] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6010950	chr2	14	8	6	28	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of TSN expression and immune infiltrating cell level correlation result in HTLV1+ samples
TSN expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of TSN expression and immune infiltrating cell level correlation result in HTLV1+ samples
TSN expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of TSN expression and immune infiltrating cell level correlation result in HTLV1+ samples
TSN expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).