HIV Target gene Detail Information

> TRUB1 Gene Search Result

Gene Information

Gene Name	TRUB1
Gene ID	142940
Gene Full Name	TruB pseudouridine synthase family member 1
Gene Alias	PUS4
Transcripts	ENSG00000165832
Virus	HIV
Gene Type	protein coding
HPA Location Info	Vesicles;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8WWH5
HGNC ID	HGNC:16060
VEGA ID	OTTHUMG00000019094
OMIM ID	610726
String ID	9606.ENSP00000298746
PharmGKB ID	PA38086

Target gene [TRUB1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002532	chr10	13	22	55	90	View
4005686	chr10	8	14	8	30	View
4006071	chr10	10	9	8	27	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TRUB1 expression and immune infiltrating cell level correlation result in HIV+ samples
TRUB1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).