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HBV Target gene Detail Information

> TRPM1 Gene Search Result


Gene Information
Gene Name TRPM1
Gene ID 4308
Gene Full Name transient receptor potential cation channel subfamily M member 1
Gene Alias MLSN1; CSNB1C; LTRPC1
Transcripts ENSG00000274965
Virus HBV
Gene Type protein coding
HPA Location Info Centriolar satellite;Golgi apparatus;Plasma membrane;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins, Voltage-gated ion channels
Uniport_ID Q7Z4N2
HGNC ID HGNC:7146
VEGA ID OTTHUMG00000129267
OMIM ID 603576
String ID 9606.ENSP00000437849
PharmGKB ID PA35496
Target gene [TRPM1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008718 chr15 17 2 19 View
1402230 chr15 17 2 19 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of TRPM1 expression and immune infiltrating cell level correlation result in HBV+ samples
TRPM1 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).