HPV Target gene Detail Information

> TRIM6-TRIM34 Gene Search Result

Gene Information

Gene Name	TRIM6-TRIM34
Gene ID	445372
Gene Full Name	TRIM6-TRIM34 readthrough
Gene Alias	IFP1; RNF21; RNF89; TRIM6; TRIM34
Transcripts	ENSG00000258588
Virus	HPV
Gene Type	protein coding
HPA Location Info	Centrosome;Nucleoli;
HPA Protein Class Info	Predicted intracellular proteins
HGNC ID	HGNC:33440
VEGA ID	OTTHUMG00000066899
PharmGKB ID	PA162406977

Target gene [TRIM6-TRIM34] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5401944	chr11	12	3	11	26	View
5403836	chr11	3	7	21	31	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of TRIM6-TRIM34 expression and immune infiltrating cell level correlation result in HPV+ samples
TRIM6-TRIM34 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).