HIV Target gene Detail Information

> TRIM54 Gene Search Result

Gene Information

Gene Name	TRIM54
Gene ID	57159
Gene Full Name	tripartite motif containing 54
Gene Alias	MURF; RNF30; muRF3; MURF-3
Transcripts	ENSG00000138100
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Plasma membrane;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9BYV2
HGNC ID	HGNC:16008
VEGA ID	OTTHUMG00000097078
OMIM ID	606474
String ID	9606.ENSP00000296098
PharmGKB ID	PA34434

Target gene [TRIM54] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4011841	chr2	5	1		6	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TRIM54 expression and immune infiltrating cell level correlation result in HIV+ samples
TRIM54 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).