HPV Target gene Detail Information

> TRIM42 Gene Search Result

Gene Information

Gene Name	TRIM42
Gene ID	287015
Gene Full Name	tripartite motif containing 42
Gene Alias	T4A1; PPP1R40
Transcripts	ENSG00000155890
Virus	HPV
Gene Type	protein coding
HPA Location Info	Mitochondria;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q8IWZ5
HGNC ID	HGNC:19014
VEGA ID	OTTHUMG00000160170
String ID	9606.ENSP00000286349
PharmGKB ID	PA134894780

Target gene [TRIM42] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5401221	chr3	2			2	View
5403604	chr3	5	3		8	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
HNSC (TCGA)	Head and Neck squamous cell carcinoma	566	Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: HNSC
HeatMap of cell type fractions in all samples	Lollipop of TRIM42 expression and immune infiltrating cell level correlation result in HPV+ samples
TRIM42 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).