HIV Target gene Detail Information

> TRIM41 Gene Search Result

Gene Information

Gene Name	TRIM41
Gene ID	90933
Gene Full Name	tripartite motif containing 41
Gene Alias	RINCK
Transcripts	ENSG00000146063
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear bodies;Nucleoli;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q8WV44
HGNC ID	HGNC:19013
VEGA ID	OTTHUMG00000130965
OMIM ID	610530
String ID	9606.ENSP00000320869
PharmGKB ID	PA134918519

Target gene [TRIM41] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4005922	chr5	28			28	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TRIM41 expression and immune infiltrating cell level correlation result in HIV+ samples
TRIM41 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of TRIM41 expression and immune infiltrating cell level correlation result in HIV+ samples
TRIM41 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).