HIV Target gene Detail Information

> TRIM28 Gene Search Result

Gene Information

Gene Name	TRIM28
Gene ID	10155
Gene Full Name	tripartite motif containing 28
Gene Alias	KAP1; TF1B; RNF96; TIF1B; PPP1R157
Transcripts	ENSG00000130726
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Enzymes, Plasma proteins, Predicted intracellular proteins
Gene Function	Oncogene
Uniport_ID	Q13263
HGNC ID	HGNC:16384
VEGA ID	OTTHUMG00000183546
OMIM ID	601742
String ID	9606.ENSP00000253024
PharmGKB ID	PA38131

Target gene [TRIM28] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001726	chr19	122	14		136	View
4003650	chr19	48	9		57	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TRIM28 expression and immune infiltrating cell level correlation result in HIV+ samples
TRIM28 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of TRIM28 expression and immune infiltrating cell level correlation result in HIV+ samples
TRIM28 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).