HIV Target gene Detail Information

> TNRC6C Gene Search Result

Gene Information

Gene Name	TNRC6C
Gene ID	57690
Gene Full Name	trinucleotide repeat containing 6C
Transcripts	ENSG00000078687
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q9HCJ0
HGNC ID	HGNC:29318
VEGA ID	OTTHUMG00000132642
OMIM ID	610741
String ID	9606.ENSP00000336783
PharmGKB ID	PA134880671

Target gene [TNRC6C] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000553	chr17	350	17	7	374	View
4000654	chr17	171	92	68	331	View
4002158	chr17	52	13	44	109	View
4002894	chr17	11	61	4	76	View
4004843	chr17	39			39	View
4005324	chr17	32	2		34	View
4006205	chr17	2	3	21	26	View
4006412	chr17	20	5		25	View
4008280	chr17	6	10		16	View
4008536	chr17	7	7	1	15	View
4008815	chr17	13	1		14	View
4009076	chr17	4	9		13	View
4009240	chr17	1	8	3	12	View
4009457	chr17	6	5		11	View
4009667	chr17	6	3	2	11	View
4009938	chr17	5	5		10	View
4011592	chr17	6			6	View
4011896	chr17	5	1		6	View
4011897	chr17	6			6	View
4012262	chr17	5			5	View
4012263	chr17	4	1		5	View
4012656	chr17	2	2		4	View
4012923	chr17		4		4	View
4013175	chr17	3	1		4	View
4013396	chr17	2	1		3	View
4014041	chr17		2		2	View
4014168	chr17	1	1		2	View
4014407	chr17	2			2	View
4014920	chr17		2		2	View
4015066	chr17	1			1	View

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).