HTLV1 Target gene Detail Information

> TNNC2 Gene Search Result

Gene Information

Gene Name	TNNC2
Gene ID	7125
Gene Full Name	troponin C2, fast skeletal type
Transcripts	ENSG00000101470
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Vesicles;
HPA Protein Class Info	FDA approved drug targets, Predicted intracellular proteins
Uniport_ID	P02585
HGNC ID	HGNC:11944
VEGA ID	OTTHUMG00000032623
OMIM ID	191039
String ID	9606.ENSP00000361636
Drugbank ID	BE0003566
PharmGKB ID	PA36633

Target gene [TNNC2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6007438	chr20	35	17	3	55	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE55851 (GEO)	Adult T-cell leukemia	21	Normal (3), Asymptomatic carriers (HTLV1+)(6), Adult T-cell Leukemia-lymphoma (HTLV1+)(12)
GSE29312 (GEO)	HTLV-1 associated myelopathy	39	Normal (9), Asymptomatic carriers (HTLV1+)(20), HTLV-1-associated myelopathy (HTLV1+)(10)
GSE29332 (GEO)	HTLV-1 associated myelopathy	35	Normal (8), Asymptomatic carriers (HTLV1+)(17), HTLV-1-associated myelopathy (HTLV1+)(10)

> Dataset: GSE55851
HeatMap of cell type fractions in all samples	Lollipop of TNNC2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
TNNC2 expression: Low -> High

> Dataset: GSE29312
HeatMap of cell type fractions in all samples	Lollipop of TNNC2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
TNNC2 expression: Low -> High

> Dataset: GSE29332
HeatMap of cell type fractions in all samples	Lollipop of TNNC2 expression and immune infiltrating cell level correlation result in HTLV1+ samples
TNNC2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).