HIV Target gene Detail Information

> TMA16 Gene Search Result

Gene Information

Gene Name	TMA16
Gene ID	55319
Gene Full Name	translation machinery associated 16 homolog
Gene Alias	C4orf43
Transcripts	ENSG00000198498
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoli;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	Q96EY4
HGNC ID	HGNC:25638
VEGA ID	OTTHUMG00000161528
String ID	9606.ENSP00000351380
PharmGKB ID	PA162379923

Target gene [TMA16] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004498	chr4	26	2	15	43	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TMA16 expression and immune infiltrating cell level correlation result in HIV+ samples
TMA16 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).