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HPV Target gene Detail Information

> TBC1D24 Gene Search Result


Gene Information
Gene Name TBC1D24
Gene ID 57465
Gene Full Name TBC1 domain family member 24
Gene Alias FIME; DOORS; TLDC6; DFNA65; DFNB86; EIEE16
Transcripts ENSG00000162065
Virus HPV
Gene Type protein coding
HPA Location Info Cell Junctions;Plasma membrane;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9ULP9
HGNC ID HGNC:29203
VEGA ID OTTHUMG00000177150
OMIM ID 613577
String ID 9606.ENSP00000293970
PharmGKB ID PA144596267
Target gene [TBC1D24] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004281 chr16 0 View
5402836 chr16 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE140662 (GEO) Condyloma Acuminatum 8 Condyloma acuminata (HPV+)(5), Skin(3)
GSE65858 (GEO) Head and neck squamous cell carcinoma 270 Head and neck squamous cell carcinoma (EBV+)(73), Head and neck squamous cell carcinoma (EBV-)(197)
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE138080 (GEO) Cervical intraepithelial neoplasia 25 Normal (10), Cervical intraepithelial neoplasia (HPV+)(15)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE140662

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE65858

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE138080

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of TBC1D24 expression and immune infiltrating cell level correlation result in HPV+ samples
TBC1D24 expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).