HIV Target gene Detail Information

> TBC1D19 Gene Search Result

Gene Information

Gene Name	TBC1D19
Gene ID	55296
Gene Full Name	TBC1 domain family member 19
Transcripts	ENSG00000109680
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Nucleoplasm;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q8N5T2
HGNC ID	HGNC:25624
VEGA ID	OTTHUMG00000097797
String ID	9606.ENSP00000264866
PharmGKB ID	PA134980991

Target gene [TBC1D19] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004088	chr4	29	10	10	49	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of TBC1D19 expression and immune infiltrating cell level correlation result in HIV+ samples
TBC1D19 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of TBC1D19 expression and immune infiltrating cell level correlation result in HIV+ samples
TBC1D19 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).