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EBV Target gene Detail Information

> SYNRG Gene Search Result


Gene Information
Gene Name SYNRG
Gene ID 11276
Gene Full Name synergin gamma
Gene Alias SYNG; AP1GBP1
Transcripts ENSG00000274047
Virus EBV
Gene Type protein coding
HPA Location Info Cytosol;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9UMZ2
HGNC ID HGNC:557
VEGA ID OTTHUMG00000191255
OMIM ID 607291
String ID 9606.ENSP00000483453
PharmGKB ID PA24847
Target gene [SYNRG] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
3000401 chr17 22 22 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE102203 (GEO) B-cell lymphoma 9 Plasmablastic lymphomas (EBV+)(6), Plasmablastic lymphomas (EBV-)(3)
GSE100458 (GEO) Burkitt lymphoma 14 Burkitt lyphoma cell line Akata(EBV+)(2),Burkitt lyphoma cell line Akata(EBV-)(2),Burkitt lyphoma cell line Awia(EBV+)(2),Burkitt lyphoma cell line Awia(EBV-)(2),Burkitt lyphoma cell line Eli(EBV+)(1),Burkitt lyphoma cell line Eli(EBV-)(1),Burkitt lyphoma cell line Mutu(EBV+)(2),Burkitt lyphoma cell line Mutu(EBV-)(2)
GSE42867 (GEO) Burkitt lymphoma 12 Burkitt lymphoma cell line Awia (EBV+)(12)
GSE85599 (GEO) Infectious mononucleosis 17 Chronic active EBV infection (EBV+)(5), Acute infectious mononucleosis (EBV+)(6), Normal (6)
GSE12452 (GEO) Nasopharyngeal carcinoma 41 Nasopharyngeal carcinoma (EBV+)(31), Normal(10)

> Dataset: GSE102203

HeatMap of cell type fractions in all samples Lollipop of SYNRG expression and immune infiltrating cell level correlation result in EBV+ samples
SYNRG expression: Low -> High

> Dataset: GSE100458

HeatMap of cell type fractions in all samples Lollipop of SYNRG expression and immune infiltrating cell level correlation result in EBV+ samples
SYNRG expression: Low -> High

> Dataset: GSE42867

HeatMap of cell type fractions in all samples Lollipop of SYNRG expression and immune infiltrating cell level correlation result in EBV+ samples
SYNRG expression: Low -> High

> Dataset: GSE85599

HeatMap of cell type fractions in all samples Lollipop of SYNRG expression and immune infiltrating cell level correlation result in EBV+ samples
SYNRG expression: Low -> High

> Dataset: GSE12452

HeatMap of cell type fractions in all samples Lollipop of SYNRG expression and immune infiltrating cell level correlation result in EBV+ samples
SYNRG expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).