HTLV1 Target gene Detail Information

> SYNE1 Gene Search Result

Gene Information

Gene Name	SYNE1
Gene ID	23345
Gene Full Name	spectrin repeat containing nuclear envelope protein 1
Gene Alias	8B; CPG2; ARCA1; EDMD4; KASH1; MYNE1; Nesp1; SCAR8; C6orf98; dJ45H2.2
Transcripts	ENSG00000131018
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Nucleoplasm;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Cancer-related genes, Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q8NF91
HGNC ID	HGNC:17089
VEGA ID	OTTHUMG00000015841
OMIM ID	608441
String ID	9606.ENSP00000356224
PharmGKB ID	PA134975331

Target gene [SYNE1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6010872	chr6	22		7	29	View
6018774	chr6	9			9	View
6027988	chr6	1			1	View
6029726	chr6	1			1	View
6032760	chr6				0	View

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).