HIV Target gene Detail Information

> SYNE1 Gene Search Result


Gene Information
Gene Name SYNE1
Gene ID 23345
Gene Full Name spectrin repeat containing nuclear envelope protein 1
Gene Alias 8B; CPG2; ARCA1; EDMD4; KASH1; MYNE1; Nesp1; SCAR8; C6orf98; dJ45H2.2
Transcripts ENSG00000131018
Virus HIV
Gene Type protein coding
HPA Location Info Nuclear membrane;Nucleoplasm;
Membrane Info Predicted membrane proteins
HPA Protein Class Info Cancer-related genes, Disease related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q8NF91
HGNC ID HGNC:17089
VEGA ID OTTHUMG00000015841
OMIM ID 608441
String ID 9606.ENSP00000356224
PharmGKB ID PA134975331
Target gene [SYNE1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4003873 chr6 46 7 53 View
4004687 chr6 6 16 18 40 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).