HIV Target gene Detail Information

> SYNDIG1 Gene Search Result

Gene Information

Gene Name	SYNDIG1
Gene ID	79953
Gene Full Name	synapse differentiation inducing 1
Gene Alias	DSPC2; IFITMD5; TMEM90B; C20orf39
Transcripts	ENSG00000101463
Virus	HIV
Gene Type	protein coding
HPA Location Info	Vesicles;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted membrane proteins, Transporters
Uniport_ID	Q9H7V2
HGNC ID	HGNC:15885
VEGA ID	OTTHUMG00000032104
OMIM ID	614311
String ID	9606.ENSP00000366058
PharmGKB ID	PA25752

Target gene [SYNDIG1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4006927	chr20	17	5		22	View
4012962	chr20	2	2		4	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SYNDIG1 expression and immune infiltrating cell level correlation result in HIV+ samples
SYNDIG1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).