HIV Target gene Detail Information

> SYCP2 Gene Search Result


Gene Information
Gene Name SYCP2
Gene ID 10388
Gene Full Name synaptonemal complex protein 2
Gene Alias SCP2; SCP-2
Transcripts ENSG00000196074
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;Cytosol;Plasma membrane;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q9BX26
HGNC ID HGNC:11490
VEGA ID OTTHUMG00000032872
OMIM ID 604105
String ID 9606.ENSP00000350162
PharmGKB ID PA36272
Target gene [SYCP2] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4014436 chr20 2 2 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).