HIV Target gene Detail Information

> SYCE3 Gene Search Result


Gene Information
Gene Name SYCE3
Gene ID 644186
Gene Full Name synaptonemal complex central element protein 3
Gene Alias THEG2; C22orf41
Transcripts ENSG00000217442
Virus HIV
Gene Type protein coding
HPA Location Info Golgi apparatus;Nucleoli;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID A1L190
HGNC ID HGNC:35245
VEGA ID OTTHUMG00000150273
OMIM ID 615775
String ID 9606.ENSP00000385480
PharmGKB ID PA164717081
Target gene [SYCE3] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4014211 chr22 2 2 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE17372 (GEO) AIDS-associated lymphoma 17 AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372

HeatMap of cell type fractions in all samples Lollipop of SYCE3 expression and immune infiltrating cell level correlation result in HIV+ samples
SYCE3 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).