HIV Target gene Detail Information

> SYCE3 Gene Search Result

Gene Information

Gene Name	SYCE3
Gene ID	644186
Gene Full Name	synaptonemal complex central element protein 3
Gene Alias	THEG2; C22orf41
Transcripts	ENSG00000217442
Virus	HIV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Nucleoli;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	A1L190
HGNC ID	HGNC:35245
VEGA ID	OTTHUMG00000150273
OMIM ID	615775
String ID	9606.ENSP00000385480
PharmGKB ID	PA164717081

Target gene [SYCE3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4014211	chr22	2			2	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SYCE3 expression and immune infiltrating cell level correlation result in HIV+ samples
SYCE3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).