HIV Target gene Detail Information

> SS18 Gene Search Result

Gene Information

Gene Name	SS18
Gene ID	6760
Gene Full Name	SS18, nBAF chromatin remodeling complex subunit
Gene Alias	SYT; SSXT
Transcripts	ENSG00000141380
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;Cytosol;
HPA Protein Class Info	Cancer-related genes, Disease related genes, Predicted intracellular proteins
Gene Function	Oncogene
Uniport_ID	Q15532
HGNC ID	HGNC:11340
VEGA ID	OTTHUMG00000179425
OMIM ID	600192
String ID	9606.ENSP00000414516
PharmGKB ID	PA36164

Target gene [SS18] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4004720	chr18	24	15	1	40	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SS18 expression and immune infiltrating cell level correlation result in HIV+ samples
SS18 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SS18 expression and immune infiltrating cell level correlation result in HIV+ samples
SS18 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).