HIV Target gene Detail Information

> SQSTM1 Gene Search Result

Gene Information

Gene Name	SQSTM1
Gene ID	8878
Gene Full Name	sequestosome 1
Gene Alias	p60; p62; A170; DMRV; OSIL; PDB3; ZIP3; p62B; NADGP; FTDALS3
Transcripts	ENSG00000284099
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Vesicles;
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins
Gene Function	Oncogene
Uniport_ID	Q13501
HGNC ID	HGNC:11280
VEGA ID	OTTHUMG00000150643
OMIM ID	601530
String ID	9606.ENSP00000374455
PharmGKB ID	PA36109

Target gene [SQSTM1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4015418	chr5		1		1	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SQSTM1 expression and immune infiltrating cell level correlation result in HIV+ samples
SQSTM1 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SQSTM1 expression and immune infiltrating cell level correlation result in HIV+ samples
SQSTM1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).