HPV Target gene Detail Information

> SOX2-OT Gene Search Result

Gene Information

Gene Name	SOX2-OT
Gene ID	347689
Gene Alias	SOX2OT; NCRNA00043
Transcripts	ENSG00000242808
Virus	HPV
Gene Type	ncRNA
HPA Location Info
HGNC ID	HGNC:20209
VEGA ID	OTTHUMG00000158186
OMIM ID	616338
lncRNASNP2 ID	NONHSAG036783.2
PharmGKB ID	PA134874116

Target gene [SOX2-OT] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5002870	chr3	5	2		7	View
5004458	chr3				0	View
5200145	chr3		2		2	View
5200341	chr3	9			9	View
5201225	chr3	8			8	View
5400882	chr3	15			15	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)
GSE55546 (GEO)	Oropharyngeal squamous cell carcinoma	16	Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO)	Oropharyngeal squamous cell carcinoma	23	Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO)	Oropharyngeal squamous cell carcinoma	36	Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of SOX2-OT expression and immune infiltrating cell level correlation result in HPV+ samples
SOX2-OT expression: Low -> High

> Dataset: GSE55546
HeatMap of cell type fractions in all samples	Lollipop of SOX2-OT expression and immune infiltrating cell level correlation result in HPV+ samples
SOX2-OT expression: Low -> High

> Dataset: GSE55544
HeatMap of cell type fractions in all samples	Lollipop of SOX2-OT expression and immune infiltrating cell level correlation result in HPV+ samples
SOX2-OT expression: Low -> High

> Dataset: GSE55542
HeatMap of cell type fractions in all samples	Lollipop of SOX2-OT expression and immune infiltrating cell level correlation result in HPV+ samples
SOX2-OT expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).