HIV Target gene Detail Information

> SNRPG Gene Search Result

Gene Information

Gene Name	SNRPG
Gene ID	6637
Gene Full Name	small nuclear ribonucleoprotein polypeptide G
Gene Alias	SMG; Sm-G
Transcripts	ENSG00000143977
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins
Uniport_ID	P62308
HGNC ID	HGNC:11163
VEGA ID	OTTHUMG00000129670
OMIM ID	603542
String ID	9606.ENSP00000272348
PharmGKB ID	PA36004

Target gene [SNRPG] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4005457	chr2	32			32	View
4006154	chr2	27			27	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SNRPG expression and immune infiltrating cell level correlation result in HIV+ samples
SNRPG expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SNRPG expression and immune infiltrating cell level correlation result in HIV+ samples
SNRPG expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).