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HPV Target gene Detail Information

> SNORD56B Gene Search Result


Gene Information
Gene Name SNORD56B
Gene ID 319139
Gene Full Name small nucleolar RNA, C/D box 56B
Gene Alias RNU56B
Transcripts ENSG00000207444
Virus HPV
Gene Type snoRNA
HPA Location Info
HGNC ID HGNC:19771
PharmGKB ID PA162404302
Target gene [SNORD56B] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5403056 chr14 4 2 6 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
GSE55546 (GEO) Oropharyngeal squamous cell carcinoma 16 Oropharyngeal cancers (HPV+)(12), Normal (4)
GSE55544 (GEO) Oropharyngeal squamous cell carcinoma 23 Oropharyngeal cancers HPV Active (11), Oropharyngeal cancers HPV Inactive (4), Oropharyngeal cancers HPV Negative (8)
GSE55542 (GEO) Oropharyngeal squamous cell carcinoma 36 Oropharyngeal cancers HPV Active (12), Oropharyngeal cancers HPV Inactive (8), Oropharyngeal cancers HPV Negative (16)
GSE51993 (GEO) Cervical intraepithelial neoplasia 24 Cervical intraepithelial neoplasia (HPV+)(17), Normal(7)
HNSC (TCGA) Head and Neck squamous cell carcinoma 566 Head and Neck squamous cell carcinoma(HPV-)(483),Head and Neck squamous cell carcinoma(HPV+)(39),Paracancerous(HPV-)(44)

> Dataset: GSE55546

HeatMap of cell type fractions in all samples Lollipop of SNORD56B expression and immune infiltrating cell level correlation result in HPV+ samples
SNORD56B expression: Low -> High

> Dataset: GSE55544

HeatMap of cell type fractions in all samples Lollipop of SNORD56B expression and immune infiltrating cell level correlation result in HPV+ samples
SNORD56B expression: Low -> High

> Dataset: GSE55542

HeatMap of cell type fractions in all samples Lollipop of SNORD56B expression and immune infiltrating cell level correlation result in HPV+ samples
SNORD56B expression: Low -> High

> Dataset: GSE51993

HeatMap of cell type fractions in all samples Lollipop of SNORD56B expression and immune infiltrating cell level correlation result in HPV+ samples
SNORD56B expression: Low -> High

> Dataset: HNSC

HeatMap of cell type fractions in all samples Lollipop of SNORD56B expression and immune infiltrating cell level correlation result in HPV+ samples
SNORD56B expression: Low -> High
Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).