HBV Target gene Detail Information

> SNED1 Gene Search Result

Gene Information

Gene Name	SNED1
Gene ID	25992
Gene Full Name	sushi, nidogen and EGF like domains 1
Gene Alias	SST3; Snep; IRE-BP1
Transcripts	ENSG00000162804
Virus	HBV
Gene Type	protein coding
HPA Location Info
HPA Protein Class Info	Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID	Q8TER0
HGNC ID	HGNC:24696
VEGA ID	OTTHUMG00000151803
OMIM ID	616634
String ID	9606.ENSP00000308893
PharmGKB ID	PA134946370

Target gene [SNED1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1008575	chr2	20			20	View
1008985	chr2	18			18	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of SNED1 expression and immune infiltrating cell level correlation result in HBV+ samples
SNED1 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).