HIV Target gene Detail Information

> SNAPC4 Gene Search Result

Gene Information

Gene Name	SNAPC4
Gene ID	6621
Gene Full Name	small nuclear RNA activating complex polypeptide 4
Gene Alias	SNAP190; PTFalpha
Transcripts	ENSG00000165684
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nuclear membrane;Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins, Transcription factors
Uniport_ID	Q5SXM2
HGNC ID	HGNC:11137
VEGA ID	OTTHUMG00000020929
OMIM ID	602777
String ID	9606.ENSP00000298532
PharmGKB ID	PA35985

Target gene [SNAPC4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002332	chr9	54	33	12	99	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SNAPC4 expression and immune infiltrating cell level correlation result in HIV+ samples
SNAPC4 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SNAPC4 expression and immune infiltrating cell level correlation result in HIV+ samples
SNAPC4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).