HIV Target gene Detail Information

> SMYD4 Gene Search Result

Gene Information

Gene Name	SMYD4
Gene ID	114826
Gene Full Name	SET and MYND domain containing 4
Gene Alias	ZMYND21
Transcripts	ENSG00000186532
Virus	HIV
Gene Type	protein coding
HPA Location Info	Golgi apparatus;Vesicles;Cytosol;Nucleoplasm;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted intracellular proteins, Predicted membrane proteins
Gene Function	Suppressor gene
Uniport_ID	Q8IYR2
HGNC ID	HGNC:21067
VEGA ID	OTTHUMG00000090570
OMIM ID	619134
String ID	9606.ENSP00000304360
PharmGKB ID	PA134925431

Target gene [SMYD4] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4002329	chr17	60	16	23	99	View
4003310	chr17	64			64	View
4013621	chr17	3			3	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)
GSE50834 (GEO)	HIV-infected disease	44	HIV infected (23), HIV/TB co-infected (21)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SMYD4 expression and immune infiltrating cell level correlation result in HIV+ samples
SMYD4 expression: Low -> High

> Dataset: GSE50834
HeatMap of cell type fractions in all samples	Lollipop of SMYD4 expression and immune infiltrating cell level correlation result in HIV+ samples
SMYD4 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).