HPV Target gene Detail Information

> SMIM3 Gene Search Result

Gene Information

Gene Name	SMIM3
Gene ID	85027
Gene Full Name	small integral membrane protein 3
Gene Alias	NID67; MST150; C5orf62
Transcripts	ENSG00000256235
Virus	HPV
Gene Type	protein coding
HPA Location Info	Vesicles;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted membrane proteins
Uniport_ID	Q9BZL3
HGNC ID	HGNC:30248
VEGA ID	OTTHUMG00000163646
OMIM ID	608324
String ID	9606.ENSP00000436897
PharmGKB ID	PA165660222

Target gene [SMIM3] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
5403213	chr5	16	2		18	View
5403921	chr5	6	1		7	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE140662 (GEO)	Condyloma Acuminatum	8	Condyloma acuminata (HPV+)(5), Skin(3)

> Dataset: GSE140662
HeatMap of cell type fractions in all samples	Lollipop of SMIM3 expression and immune infiltrating cell level correlation result in HPV+ samples
SMIM3 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).