HIV Target gene Detail Information

> SMG9 Gene Search Result

Gene Information

Gene Name	SMG9
Gene ID	56006
Gene Full Name	SMG9, nonsense mediated mRNA decay factor
Gene Alias	HBMS; C19orf61; F17127_1
Transcripts	ENSG00000105771
Virus	HIV
Gene Type	protein coding
HPA Location Info	Cytosol;Mitochondria;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Disease related genes, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID	Q9H0W8
HGNC ID	HGNC:25763
VEGA ID	OTTHUMG00000150337
OMIM ID	613176
String ID	9606.ENSP00000270066
PharmGKB ID	PA162378734

Target gene [SMG9] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4001406	chr19	168	1		169	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
GSE17372 (GEO)	AIDS-associated lymphoma	17	AIDS-Related Lymphomas (HIV+)(17)

> Dataset: GSE17372
HeatMap of cell type fractions in all samples	Lollipop of SMG9 expression and immune infiltrating cell level correlation result in HIV+ samples
SMG9 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).