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HIV Target gene Detail Information

> SMG6 Gene Search Result


Gene Information
Gene Name SMG6
Gene ID 23293
Gene Full Name SMG6, nonsense mediated mRNA decay factor
Gene Alias EST1A; SMG-6; C17orf31; hSMG5/7a
Transcripts ENSG00000070366
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoli;Cytosol;
HPA Protein Class Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q86US8
HGNC ID HGNC:17809
VEGA ID OTTHUMG00000177578
OMIM ID 610963
String ID 9606.ENSP00000263073
Drugbank ID BE0002478
PharmGKB ID PA25584
Target gene [SMG6] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000085 chr17 838 213 136 1187 View
4000293 chr17 181 152 249 582 View
4000340 chr17 277 48 198 523 View
4000341 chr17 277 48 198 523 View
4000342 chr17 277 48 198 523 View
4000343 chr17 277 48 198 523 View
4000344 chr17 277 48 198 523 View
4000345 chr17 277 48 198 523 View
4000346 chr17 277 48 198 523 View
4000347 chr17 277 48 198 523 View
4000383 chr17 358 49 93 500 View
4000865 chr17 15 86 161 262 View
4001653 chr17 123 17 3 143 View
4003158 chr17 36 16 16 68 View
4003180 chr17 44 8 15 67 View
4004971 chr17 30 2 5 37 View
4005094 chr17 21 13 2 36 View
4005168 chr17 34 1 35 View
4005202 chr17 9 11 15 35 View
4005603 chr17 29 2 31 View
4006683 chr17 3 20 23 View
4006989 chr17 21 21 View
4007253 chr17 20 20 View
4007876 chr17 17 17 View
4007877 chr17 11 6 17 View
4008769 chr17 14 14 View
4009231 chr17 5 6 1 12 View
4010405 chr17 8 1 9 View
4011532 chr17 4 2 6 View
4012249 chr17 4 1 5 View
4012909 chr17 4 4 View
4015298 chr17 1 1 View
4015299 chr17 1 1 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).