HTLV1 Target gene Detail Information

> SMG5 Gene Search Result

Gene Information

Gene Name	SMG5
Gene ID	23381
Gene Full Name	SMG5, nonsense mediated mRNA decay factor
Gene Alias	EST1B; SMG-5; LPTSRP1; LPTS-RP1
Transcripts	ENSG00000198952
Virus	HTLV1
Gene Type	protein coding
HPA Location Info	Cytoplasmic bodies;
Membrane Info	Predicted membrane proteins
HPA Protein Class Info	Predicted membrane proteins
Uniport_ID	Q9UPR3
HGNC ID	HGNC:24644
VEGA ID	OTTHUMG00000017491
OMIM ID	610962
String ID	9606.ENSP00000355261
PharmGKB ID	PA143485617

Target gene [SMG5] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
6011331	chr1	26	1		27	View
6015543	chr1	13	1		14	View

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).