HIV Target gene Detail Information

> SMG1 Gene Search Result

Gene Information

Gene Name	SMG1
Gene ID	23049
Gene Full Name	SMG1, nonsense mediated mRNA decay associated PI3K related kinase
Gene Alias	ATX; LIP; 61E3.4
Transcripts	ENSG00000157106
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Enzymes, Predicted intracellular proteins
Uniport_ID	Q96Q15
HGNC ID	HGNC:30045
VEGA ID	OTTHUMG00000166900
OMIM ID	607032
String ID	9606.ENSP00000402515
PharmGKB ID	PA164725852

Target gene [SMG1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000705	chr16	280	19	11	310	View
4001133	chr16	46	69	92	207	View
4001396	chr16	156	13		169	View
4002107	chr16	110	2		112	View
4005601	chr16	27	4		31	View
4006681	chr16	23			23	View
4006718	chr16	23			23	View
4007127	chr16	21			21	View
4007128	chr16	21			21	View
4007129	chr16	21			21	View
4007130	chr16	21			21	View
4007131	chr16	21			21	View
4007133	chr16	21			21	View
4007134	chr16	21			21	View
4007135	chr16	21			21	View
4007136	chr16	21			21	View
4009228	chr16	12			12	View
4012238	chr16	4	1		5	View
4015517	chr16	1			1	View

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).