HIV Target gene Detail Information

> SMCHD1 Gene Search Result


Gene Information
Gene Name SMCHD1
Gene ID 23347
Gene Full Name structural maintenance of chromosomes flexible hinge domain containing 1
Gene Alias BAMS; FSHD2
Transcripts ENSG00000101596
Virus HIV
Gene Type protein coding
HPA Location Info Nucleoplasm;Nuclear bodies;
HPA Protein Class Info Disease related genes, Predicted intracellular proteins
Gene Function Suppressor gene
Uniport_ID A6NHR9
HGNC ID HGNC:29090
VEGA ID OTTHUMG00000178235
OMIM ID 614982
String ID 9606.ENSP00000326603
PharmGKB ID PA128395776
Target gene [SMCHD1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4000180 chr18 42 431 338 811 View
4003977 chr18 33 18 51 View
4004219 chr18 47 47 View
4008007 chr18 9 8 17 View
4010151 chr18 9 9 View
4010962 chr18 8 8 View
4012925 chr18 2 1 1 4 View
4013103 chr18 2 2 4 View
4014170 chr18 1 1 2 View
4014717 chr18 1 1 2 View
4014718 chr18 2 2 View
4016255 chr18 0 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).