HIV Target gene Detail Information

> SMC1B Gene Search Result


Gene Information
Gene Name SMC1B
Gene ID 27127
Gene Full Name structural maintenance of chromosomes 1B
Gene Alias SMC1L2; SMC1BETA
Transcripts ENSG00000077935
Virus HIV
Gene Type protein coding
HPA Location Info Cytosol;Nucleoplasm;
HPA Protein Class Info Predicted intracellular proteins
Uniport_ID Q8NDV3
HGNC ID HGNC:11112
VEGA ID OTTHUMG00000151334
OMIM ID 608685
String ID 9606.ENSP00000350036
PharmGKB ID PA35962
Target gene [SMC1B] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
4004405 chr22 43 2 45 View
4004406 chr22 43 2 45 View
4004470 chr22 42 2 44 View
4005230 chr22 34 1 35 View
4007150 chr22 20 1 21 View
4015361 chr22 1 1 View

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).