HBV Target gene Detail Information

> SMARCC2 Gene Search Result

Gene Information

Gene Name	SMARCC2
Gene ID	6601
Gene Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 2
Gene Alias	Rsc8; BAF170; CRACC2
Transcripts	ENSG00000139613
Virus	HBV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Predicted intracellular proteins, Transcription factors
Uniport_ID	Q8TAQ2
HGNC ID	HGNC:11105
VEGA ID	OTTHUMG00000170288
OMIM ID	601734
String ID	9606.ENSP00000267064
PharmGKB ID	PA35955

Target gene [SMARCC2] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
1007162	chr12	30			30	View

Relationship between gene expression and immune infiltrating cell level

Data ID	Disease	Sample number	Sample type
LIHC (TCGA)	Liver hepatocellular carcinoma	424	Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC
HeatMap of cell type fractions in all samples	Lollipop of SMARCC2 expression and immune infiltrating cell level correlation result in HBV+ samples
SMARCC2 expression: Low -> High

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).