HIV Target gene Detail Information

> SMARCC1 Gene Search Result

Gene Information

Gene Name	SMARCC1
Gene ID	6599
Gene Full Name	SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1
Gene Alias	Rsc8; SRG3; SWI3; BAF155; CRACC1
Transcripts	ENSG00000173473
Virus	HIV
Gene Type	protein coding
HPA Location Info	Nucleoplasm;
HPA Protein Class Info	Plasma proteins, Predicted intracellular proteins, Transcription factors
Gene Function	Suppressor gene
Uniport_ID	Q92922
HGNC ID	HGNC:11104
VEGA ID	OTTHUMG00000133519
OMIM ID	601732
String ID	9606.ENSP00000254480
PharmGKB ID	PA35954

Target gene [SMARCC1] related to VISs

DVID	Chromosome	HM	TFBS	CA	Sum of Overlapped Records	Detail
4000390	chr3	47	144	304	495	View
4000847	chr3	248	8	10	266	View
4001975	chr3	12	105	2	119	View
4004979	chr3	35	2		37	View
4005072	chr3	21	15		36	View
4005283	chr3	31	3		34	View
4006033	chr3	11	16		27	View
4006468	chr3	13	9	2	24	View
4008429	chr3	10	4	1	15	View
4009775	chr3	3		7	10	View
4010216	chr3	7	2		9	View
4010742	chr3		6	2	8	View
4013252	chr3	3	1		4	View

Contents
Description

Gene Information Note

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).