HBV Target gene Detail Information

> SLCO6A1 Gene Search Result


Gene Information
Gene Name SLCO6A1
Gene ID 133482
Gene Full Name solute carrier organic anion transporter family member 6A1
Gene Alias GST; CT48; OATPY; OATP-I; OATP6A1
Transcripts ENSG00000205359
Virus HBV
Gene Type protein coding
HPA Location Info
Membrane Info Predicted membrane proteins
HPA Protein Class Info Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q86UG4
HGNC ID HGNC:23613
VEGA ID OTTHUMG00000162759
OMIM ID 613365
String ID 9606.ENSP00000421339
PharmGKB ID PA134949852
Target gene [SLCO6A1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1015442 chr5 1 1 2 View
1019274 chr5 0 View
1019275 chr5 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SLCO6A1 expression and immune infiltrating cell level correlation result in HBV+ samples
SLCO6A1 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).