HBV Target gene Detail Information

> SLC8A1 Gene Search Result


Gene Information
Gene Name SLC8A1
Gene ID 6546
Gene Full Name solute carrier family 8 member A1
Gene Alias NCX1
Transcripts ENSG00000183023
Virus HBV
Gene Type protein coding
HPA Location Info Nucleoplasm;Plasma membrane;
Membrane Info Predicted membrane proteins
HPA Protein Class Info FDA approved drug targets, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID P32418
HGNC ID HGNC:11068
VEGA ID OTTHUMG00000102183
OMIM ID 182305
String ID 9606.ENSP00000384763
Drugbank ID BE0000986
PharmGKB ID PA314
Target gene [SLC8A1] related to VISs
DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1008311 chr2 5 11 5 21 View
1017544 chr2 0 View
1018143 chr2 0 View

Relationship between gene expression and immune infiltrating cell level
Data ID Disease Sample number Sample type
LIHC (TCGA) Liver hepatocellular carcinoma 424 Liver hepatocellular carcinoma HCV (HBV+)(86), Liver hepatocellular carcinoma HCV (HBV-)(19), Liver hepatocellular carcinoma (HBV+)(209), Liver hepatocellular carcinoma (HBV+)(60), Paracancerous HCV (HBV+)(4), Paracancerous (HBV-)(28), Paracancerous (HBV+)(18)

> Dataset: LIHC

HeatMap of cell type fractions in all samples Lollipop of SLC8A1 expression and immune infiltrating cell level correlation result in HBV+ samples
SLC8A1 expression: Low -> High

Contents
Description

Gene Information Note

  • Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in the "Target gene [gene] related to VIS" section

Immune Analysis Plot Note

  • Left: Heatmap of target gene expression and the level of various types of immune cells (cell type fractions) in all samples based on CIBERSORT method.
  • Right: Correlation of target gene expression and the level of various types of immune cells in virus positive samples (Pearson Correlation Coefficient).